Coral reefs are the most diverse of all marine ecosystems. Because of their environmental and scientific importance as  bioaccumulator, the concentrations of Al, Cd, Ni and Pb in sediments, water and coral samples in Hengam Island were assessed using AAS. The elevated levels of heavy matels were observed in Acropora clathrata, Echinipora sp. and Sinularia sp. Calculated BAF resutls showed that all corals have a good ability to absorb Cadmium and Lead from water compared with sediments which is due to filter feeding nature of corals. The maximun and minimum concentration of heavy metal was observed in the stations 1 and 3 respectively in most studied corals. Considering water flows in the Persian Gulf, it can be concluded that station 1 is in contact with sea flows coming from Hormoz Strait, in contrast with station 3 which is located in a closed and confine area. Fossil fuels from fishing and passing boats seem to be the most important contaminating factor in Hengam Island.